publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2026

  1. Clinical Note Bloat Reduction for Efficient LLM Use
    Jordan L Cahoon , Chloe Stanwyck , Asad Aali, and 5 more authors
    In arXiv preprint arXiv:2604.16364, 2026, 2026
    arXiv Scholar
  2. Clinician input steers frontier AI models toward both accurate and harmful decisions
    Ivan Lopez , Selin S Everett , Bryan J Bunning, and 10 more authors
    In arXiv preprint arXiv:2603.14158, 2026, 2026
    arXiv Scholar
  3. Boards-style benchmarks overestimate prior-chat bias in large language models: a factorial evaluation study
    COC Stanwyck , A Adibi , P Dozie-Nnamah, and 1 more author
    medRxiv, 2026.02. 12.26346164, 2026, 2026
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  4. MedAgentBrief for Hospital Course Summarization: Safety, Use, and Discharge Documentation Burden
    François Grolleau , April S Liang , Timothy Keyes, and 20 more authors
    medRxiv, 2026.02. 05.26345607, 2026, 2026
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  5. Holistic evaluation of large language models for medical tasks with MedHELM
    Suhana Bedi , Hejie Cui , Miguel Fuentes, and 80 more authors
    Nature Medicine, 1-9, 2026, 2026
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  6. AI-generated data contamination erodes pathological variability and diagnostic reliability
    Hongyu He , Shaowen Xiang , Ye Zhang, and 15 more authors
    In arXiv preprint arXiv:2601.12946, 2026, 2026
    arXiv Scholar
  7. Monitoring Deployed AI Systems in Health Care
    Timothy Keyes , Alison Callahan , Abby S Pandya, and 18 more authors
    In ArXiv, arXiv: 2512.09048 v2, 2026, 2026
    arXiv Scholar
  8. Bias and Equity in LLM Applications for Healthcare: A Scoping Review
    Jingchi Liao , Huitao Li , Rui Yang, and 15 more authors
    2026
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  9. Training-Free Adaptation of New-Generation LLMs using Legacy Clinical Models
    Sasha Ronaghi , Chloe Stanwyck , Asad Aali, and 4 more authors
    In arXiv preprint arXiv:2601.03423, 2026, 2026
    arXiv Scholar

2025

  1. APRIL: Annotations for Policy evaluation with Reliable Inference from LLMs
    A Mandyam , K Limaye , BE Engelhardt, and 1 more author
    In Proceedings of Machine Learning Research 297, Machine Learning for Health 2025, 2025
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  2. Performance Benchmarking of Smaller Language Models Against GPT-4 for Predicting Reasons for Oral Anticoagulation Nonprescription in Atrial Fibrillation
    Sulaiman Somani , Dale Kim , Eduardo Perez Guerrero, and 6 more authors
    Circulation 152 (Suppl_3), A4366575-A4366575, 2025, 2025
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  3. Large Language Models for Large-Scale, Rigorous Qualitative Analysis in Applied Health Services Research
    S Ronaghi , EL Aveling , M Levis, and 3 more authors
    Research Square, rs. 3. rs-7794878, 2025, 2025
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  4. Structured Prompting Enables More Robust, Holistic Evaluation of Language Models
    Asad Aali , Muhammad Ahmed Mohsin , Vasiliki Bikia, and 16 more authors
    In arXiv e-prints, arXiv: 2511.20836, 2025, 2025
    arXiv Scholar
  5. The Moment AI Arrived in the Clinic: Insights from the SAIL 2025 Year in Review
    Pierre Elias , Kameron Collin Black , Payal Chandak, and 6 more authors
    NEJM AI 2 (11), AIp2500788, 2025, 2025
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  6. Patient-Physician Messaging by Race, Ethnicity, Insurance Type, and Preferred Language
    Lisa S Rotenstein , Brianna Hardy , Mitchell Tang, and 4 more authors
    JAMA Network Open 8 (10), e2534549, 2025, 2025
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  7. Predicting Postpartum Hemorrhage Using Clinical Features Extracted With Large Language Models
    Elizabeth G Woo , Israel Zighelboim , Tyler Gifford, and 6 more authors
    O&G Open 2 (5), e128, 2025, 2025
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  8. TIMER: temporal instruction modeling and evaluation for longitudinal clinical records
    H Cui , A Unell , B Chen, and 4 more authors
    npj Digital Medicine 8 (1), 577, 2025, 2025
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  9. Redefining bias audits for generative AI in health care
    IY Chen , and E Alsentzer
    NEJM AI 2 (9), AIp2500015, 2025, 2025
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  10. Medval: Toward expert-level medical text validation with language models
    Asad Aali , Vasiliki Bikia , Maya Varma, and 24 more authors
    In arXiv preprint arXiv:2507.03152, 2025, 2025
    arXiv Scholar
  11. Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
    Emily Alsentzer , Michelle M Li , Shilpa N Kobren, and 4 more authors
    npj Digital Medicine 8 (1), 380, 2025, 2025
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  12. Verifiable Summarization of Electronic Health Records Using Large Language Models to Support Chart Review
    Ritchie Verma , Emily Alsentzer , Zachary Strasser, and 11 more authors
    medRxiv, 2025, 2025
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  13. Synthetic data distillation enables the extraction of clinical information at scale
    EG Woo , MC Burkhart , E Alsentzer, and 1 more author
    npj Digital Medicine 8 (1), 267, 2025, 2025
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  14. BRIDGE: benchmarking large language models for understanding real-world clinical practice text
    Jiageng Wu , Bowen Gu , Ren Zhou, and 14 more authors
    In arXiv preprint arXiv:2504.19467, 2025, 2025
    arXiv Scholar
  15. Understanding contraceptive switching rationales from real world clinical notes using large language models
    Brenda Y Miao , Christopher YK Williams , Ebenezer Chinedu-Eneh, and 4 more authors
    npj Digital Medicine 8 (1), 221, 2025, 2025
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  16. It’s time to bench the medical exam benchmark
    ID Raji , R Daneshjou , and E Alsentzer
    Nejm Ai 2 (2), AIe2401235, 2025, 2025
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  17. Retrieval-Augmented Guardrails for AI-Drafted Patient-Portal Messages: Error Taxonomy Construction and Large-Scale Evaluation
    Wenyuan Chen , Fateme Nateghi Haredasht , Kameron C Black, and 4 more authors
    In Biocomputing 2026: Proceedings of the Pacific Symposium, 189-204, 2025, 2025
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  18. MedFactEval and MedAgentBrief: A Framework and Workflow for Generating and Evaluating Factual Clinical Summaries
    Françcois Grolleau , Emily Alsentzer , Timothy Keyes, and 17 more authors
    In Biocomputing 2026: Proceedings of the Pacific Symposium, 388-399, 2025, 2025
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  19. Best of Both Worlds: Combining General and Clinical Language Models for Classification and Text Generation
    Sasha Ronaghi , Asad Aali , Chloe O’Connell Stanwyck, and 3 more authors
    Machine Learning for Health 2025, 2025
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  20. Scalable Question Generation for Evaluating Longitudinal Reasoning in Electronic Health Records
    Jordan Li Cahoon , Chloe O’Connell Stanwyck , Sulaiman Somani, and 5 more authors
    Machine Learning for Health 2025, 2025
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  21. Prompt Optimization Improves Robustness of Language Model Benchmarks for Medical Tasks
    Asad Aali , Muhammad Ahmed Mohsin , Vasiliki Bikia, and 13 more authors
    Machine Learning for Health 2025, 2025
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2024

  1. Leveraging large language models to foster equity in healthcare
    JA Rodriguez , E Alsentzer , and DW Bates
    Journal of the American Medical Informatics Association 31 (9), 2147-2150, 2024, 2024
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  2. GENERATIVE AI IN PRIMARY CARE: LESSONS FROM AMBIENT LISTENING DOCUMENTATION AND DRAFTING PATIENT PORTAL REPLIES
    Jacqueline G You , Amanda J Centi , Emily Alsentzer, and 8 more authors
    JOURNAL OF GENERAL INTERNAL MEDICINE 39, S450-S450, 2024, 2024
    Scholar
  3. Assessing the potential of GPT-4 to perpetuate racial and gender biases in health care: a model evaluation study
    Travis Zack , Eric Lehman , Mirac Suzgun, and 9 more authors
    The Lancet Digital Health 6 (1), e12-e22, 2024, 2024
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2023

  1. Predicting seizure recurrence after an initial seizure-like episode from routine clinical notes using large language models: a retrospective cohort study
    Brett K Beaulieu-Jones , Mauricio F Villamar , Phil Scordis, and 7 more authors
    The Lancet Digital Health 5 (12), e882-e894, 2023, 2023
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  2. Zero-shot interpretable phenotyping of postpartum hemorrhage using large language models
    Emily Alsentzer , Matthew J Rasmussen , Romy Fontoura, and 5 more authors
    NPJ digital medicine 6 (1), 212, 2023, 2023
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  3. Simulation of undiagnosed patients with novel genetic conditions
    Emily Alsentzer , Samuel G Finlayson , Michelle M Li, and 3 more authors
    Nature Communications 14 (1), 6403, 2023, 2023
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  4. Towards medical billing automation: NLP for outpatient clinician note classification
    MG Crowson , E Alsentzer , J Fiskio, and 1 more author
    medRxiv, 2023.07. 07.23292367, 2023, 2023
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  5. Do we still need clinical language models?
    Eric Lehman , Evan Hernandez , Diwakar Mahajan, and 7 more authors
    In Conference on health, inference, and learning, 578-597, 2023, 2023
    arXiv HTML Scholar PDF Code

2022

  1. Mitigating the impact of biased artificial intelligence in emergency decision-making
    H Adam , A Balagopalan , E Alsentzer, and 2 more authors
    Communications Medicine 2 (1), 149, 2022, 2022
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  2. Knowledge-based systems in medicine
    P Szolovits , and E Alsentzer
    Intelligent Systems in Medicine and Health: The Role of AI, 75-108, 2022, 2022
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  3. Just following ai orders: When unbiased people are influenced by biased ai
    H Adam , A Balagopalan , E Alsentzer, and 2 more authors
    In Workshop on Trustworthy and Socially Responsible Machine Learning, NeurIPS 2022, 2022, 2022
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2021

  1. What’s in a summary? laying the groundwork for advances in hospital-course summarization
    G Adams , E Alsentzer , M Ketenci, and 2 more authors
    In Proceedings of the 2021 Conference of the North American Chapter of the …, 2021, 2021
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2020

  1. Assessing 3 outbreak detection algorithms in an electronic syndromic surveillance system in a resource-limited setting
    Emily Alsentzer , Sarah-Blythe Ballard , Joan Neyra, and 5 more authors
    Emerging Infectious Diseases 26 (9), 2196, 2020, 2020
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  2. Baselines for chest x-ray report generation
    W Boag , TMH Hsu , M McDermott, and 3 more authors
    In Machine learning for health workshop, 126-140, 2020, 2020
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  3. Intimate partner violence and injury prediction from radiology reports
    Irene Y Chen , Emily Alsentzer , Hyesun Park, and 4 more authors
    In BIOCOMPUTING 2021: Proceedings of the Pacific Symposium, 55-66, 2020, 2020
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  4. Subgraph neural networks
    E Alsentzer , S Finlayson , M Li, and 1 more author
    Advances in Neural Information Processing Systems 33, 8017-8029, 2020, 2020
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2019

  1. Publicly available clinical BERT embeddings
    Emily Alsentzer , John Murphy , William Boag, and 4 more authors
    In Proceedings of the 2nd clinical natural language processing workshop, 72-78, 2019, 2019
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2018

  1. Scalable Electronic Phenotyping For Studying Patient Comorbidities
    AY Ling , E Alsentzer , J Chen, and 3 more authors
    In AMIA Annual Symposium Proceedings 2018, 740, 2018, 2018
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  2. Extractive summarization of ehr discharge notes
    E Alsentzer , and A Kim
    In arXiv preprint arXiv:1810.12085, 2018, 2018
    arXiv Scholar
  3. Investigating inequities in hospital care among lesbian, gay, bisexual, and transgender (LGBT) individuals using social media
    Y Hswen , KC Sewalk , E Alsentzer, and 3 more authors
    Social science & medicine 215, 92-97, 2018, 2018
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2016

  1. The effect of microbial colonization on the host proteome varies by gastrointestinal location
    Joshua S Lichtman , Emily Alsentzer , Mia Jaffe, and 9 more authors
    The ISME journal 10 (5), 1170-1181, 2016, 2016
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2015

  1. Monitoring acute diarrhea via an electronic surveillance system in the Peruvian Navy
    Emily Alsentzer , Delphis M Vera , Joan Neyra, and 6 more authors
    Online Journal of Public Health Informatics 7 (1), 2015, 2015
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2014

  1. An algorithm developed using the Brighton Collaboration case definitions is more efficient for determining diagnostic certainty
    D Joshi , E Alsentzer , K Edwards, and 2 more authors
    Vaccine 32 (28), 3469-3472, 2014, 2014
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